PDB Worldwide Protein Data Bank Homepage

Welcome to the homepage of the PDB Worldwide Protein Data Bank, your go-to resource for exploring the fascinating world of protein structures.

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Use “pdb.set_trace()” to insert a breakpoint in your code and start the debugger.

Education Corner: ACA Literacy Portal for PDB

The ACA Literacy Portal for PDB is a valuable resource for anyone interested in protein structure. The portal provides a series of educational materials that cover topics such as crystallography, data analysis, and visualization. To access the portal, simply click on the “Education Corner” link on the PDB Worldwide Protein Data Bank homepage. Once there, you can browse through a range of resources, including tutorials, webinars, and case studies. To make the most of the ACA Literacy Portal, be sure to explore all the different sections and take advantage of the interactive tools and quizzes. Whether you’re a student, researcher, or just curious about the world of protein structure, this portal is an excellent place to start.

PDB is a valuable resource for understanding protein structure and function.

Helen Berman’s Contributions to PDB and National Academy of Sciences

Helen Berman played a significant role in the development of the Protein Data Bank (PDB) and was a founding member of the Research Collaboratory for Structural Bioinformatics (RCSB). She served as the director of the RCSB PDB from 1998 to 2014. Berman also contributed to the National Academy of Sciences, serving on their Board of Life Sciences and receiving the Academy’s Award in Chemical Sciences in 2010. Her work focused on understanding the structure and function of proteins and nucleic acids. The PDB is a valuable resource for researchers worldwide, providing access to over 170,000 structures of proteins, nucleic acids, and complex assemblies. Berman’s contributions to the PDB and the scientific community have helped advance our understanding of biological molecules and their interactions.

PDB provides a global repository for structural data on biological macromolecules.


import pdb

def my_function(x, y):
pdb.set_trace() # Add this line to set a breakpoint
result = x + y
return result

print(my_function(2, 3))

This code creates a function that takes two arguments and returns their sum. The `pdb.set_trace()` line sets a breakpoint at that point in the code, allowing you to step through the code one line at a time and examine the variables and their values at each step. This can be helpful in finding errors in your code or understanding how it works.

Opportunities to Learn: Virtual Crash Course on PDBx/mmCIF

Looking to expand your knowledge of PDBx/mmCIF? The Protein Data Bank offers a virtual crash course on this topic, providing valuable opportunities to learn. Accessible through the PDB Worldwide Protein Data Bank Homepage, this course is a great way to gain a deeper understanding of PDBx/mmCIF and its applications. Enroll today and discover new resources to enhance your learning experience. During the course, you will have the chance to learn about various topics related to PDBx/mmCIF, including its structure and use in research. Utilize Python and other tools to explore PDBx/mmCIF data in depth. This is a fantastic opportunity for anyone looking to expand their expertise in this field. Don’t miss out on this valuable chance to learn!

Updated: May 2024

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Updates and Highlights: Annual Reports and Spring Newsletter

  • Annual Report: The PDB Worldwide Protein Data Bank released its annual report for the previous year, highlighting key achievements and developments in the field of protein research.
  • Spring Newsletter: The organization’s spring newsletter is now available, featuring articles on recent research findings, updates on PDB’s activities and collaborations, and news from the broader scientific community.
    Annual Report: The PDB Worldwide Protein Data Bank released its annual report for the previous year, highlighting key achievements and developments in the field of protein research.
Spring Newsletter: The organization's spring newsletter is now available, featuring articles on recent research findings, updates on PDB's activities and collaborations, and news from the broader scientific community.
  • New Data: The PDB has added a significant amount of new data to its database, including structures of proteins involved in various diseases and health conditions.
  • Improved Search Functionality: The PDB website now offers improved search functionality, making it easier for researchers to find and access the data they need.
  • Expanded Education and Outreach Programs: PDB has expanded its education and outreach programs, providing resources and support to students and researchers around the world.

Celebrating DNA Day and Poster Prize Awards in PDB Community

The PDB community is celebrating DNA Day and Poster Prize Awards with a range of events and activities. Visit the PDB Worldwide Protein Data Bank Homepage to learn more about these exciting initiatives. The Poster Prize Awards recognize outstanding contributions to research in structural biology and related fields. The winners will receive cash prizes and the opportunity to present their work at scientific conferences. DNA Day commemorates the discovery of the double helix structure of DNA and promotes education and awareness of genetics and genomics. The PDB community is participating in a range of events, including lectures, workshops, and online activities. Join us in celebrating these important milestones and advancing our understanding of the fundamental building blocks of life.

Viewer’s Choice Award and Other Engagement Opportunities

The PDB Worldwide Protein Data Bank Homepage offers various engagement opportunities, including the Viewer’s Choice Award. Each month, visitors can vote for their favorite molecule structure showcased on the homepage. Additionally, users can explore various educational resources, such as tutorials and videos, to learn more about proteins and their structures. For those interested in contributing to the PDB, there are opportunities to deposit structures or participate in the validation process. The website also hosts a variety of software tools and resources for researchers and educators. To get involved, simply visit the homepage and explore the different engagement opportunities available. Don’t forget to check back regularly for updates and new contests.

Looking Ahead: 2022 Annual Report and Future Developments in PDB

Looking Ahead: 2022 Annual Report and Future Developments in PDB
Article Title PDB Worldwide Protein Data Bank Homepage
Publication Date January 1, 2022
Author PDB Worldwide Protein Data Bank
Overview The 2022 Annual Report for PDB will highlight the latest developments in the field of protein data bank, including new structures and improved tools for data analysis. Additionally, PDB is planning to introduce several new features in the coming year to enhance the user experience and improve data accessibility.
Future Developments Some of the key developments planned for PDB in 2022 include:
  • Improved search functionality to make it easier to find specific structures
  • Expansion of the ligand dictionary to include more detailed information about small molecules
    Improved search functionality to make it easier to find specific structures
Expansion of the ligand dictionary to include more detailed information about small molecules
  • Introduction of a new API to allow for easier programmatic access to PDB data
  • Enhancement of the website’s visualization tools to allow for more detailed analysis of structures
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